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chicAggregateStatistic tool metadata

Miscellaneous

Name: chicAggregateStatistic

Description: computes with a target file the to be tested regions for chicDifferentialTest

Id: hicexplorer_chicaggregatestatistic

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.3.1

Version: 3.4.3.1

Version command string: chicAggregateStatistic --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.3.1 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.3.1.0

hicexplorer_chicaggregatestatistic

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.3

package

Functional tests

name

inputs

outputs

required files

Test-1

tar_input_conditional|interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt']
tar_input_conditional|targetFiles: ['cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt']
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt
batchmode_conditional|targetFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_target_list.txt
batchmode_conditional|batchmode_selector: optionBatchmode

name: value

cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt
cHi-C/chicViewpoint/fileNames_two_matrices.txt
cHi-C/chicSignificantInteractions/output_5_target_list.txt
value

Test-2

tar_input_conditional|interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt']
tar_input_conditional|targetFiles: cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt
batchmode_conditional|batchmode_selector: optionSinglemode

cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt

Test-3

tar_input_conditional|interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt']
tar_input_conditional|targetFiles: ['cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt']
tar_input_conditional|tar_input_selector: interval_input
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt
batchmode_conditional|targetFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_target_list.txt
batchmode_conditional|batchmode_selector: optionBatchmode
tar: True

name: value
name: value

Test-4

tar_input_conditional|interactionFiles: cHi-C/chicViewpoint/output_1.tar
tar_input_conditional|targetFiles: cHi-C/chicSignificantInteractions/targetFolder.tar
tar_input_conditional|tar_input_selector: tar_input
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt
batchmode_conditional|targetFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_target_list.txt
batchmode_conditional|batchmode_selector: optionBatchmode
tar: True

name: value
name: value

cHi-C/chicViewpoint/output_1.tar
cHi-C/chicSignificantInteractions/targetFolder.tar
cHi-C/chicViewpoint/fileNames_two_matrices.txt
cHi-C/chicSignificantInteractions/output_5_target_list.txt
value