Repository revision
0:ee745fbe9f14

Repository 'hicexplorer_chicaggregatestatistic'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic

chicAggregateStatistic tool metadata
Miscellaneous
computes with a target file the to be tested regions for chicDifferentialTest
hicexplorer_chicaggregatestatistic
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.3.1.0
3.3.1.0
chicAggregateStatistic --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.3.1.0 (this tool)
hicexplorer_chicaggregatestatistic
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.3.1 package
Functional tests
name inputs outputs required files
Test-1 batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt
batchmode_conditional|batchmode_selector: optionBatchmode
batchmode_conditional|targetFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_target_list.txt
interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed']
targetFiles: ['cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed', 'cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed']
attributes: name
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
cHi-C/chicViewpoint/fileNames_two_matrices.txt
cHi-C/chicSignificantInteractions/output_5_target_list.txt
name
Test-2 batchmode_conditional|batchmode_selector: optionSinglemode
interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed']
targetFiles: cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed