| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/graphmap_overlap/graphmap_overlap/0.5.2 (this tool) |
| graphmap_overlap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| graphmap | 0.5.2 | package |
| samtools | 1.9 | package |
| Additional information about this tool |
ln -s '$r' ref.${r.ext} &&
ln -s '$d' reads.${d.ext} &&
graphmap owler
-r ref.${r.ext}
-d reads.${d.ext}
-o output.mhap
#if $preset:
-x $preset
#end if
-t \${GALAXY_SLOTS:-4}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
r: Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta d: E.coli_contigs.fasta |
name: value |
Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta E.coli_contigs.fasta value |
| Test-2 |
r: Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta d: E.coli_contigs.fasta preset: no-filters |
name: value |
Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta E.coli_contigs.fasta value |