| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10 |
| fasttree |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fasttree | 2.1.10 | package |
| Additional information about this tool |
FastTree
$model_selector.format
$model_selector.model
-nopr
#if $input_selector.select_format == 'fasta':
$input_selector.quote
#else if $input_selector.select_format == 'phylip':
-n $input_selector.num
#end if
#set $inform = $input_selector.intree_selector.intree_format
#if $inform == 'one':
-intree1 '$input_selector.intree_selector.start_tree'
#else if $inform == 'many':
-intree '$input_selector.intree_selector.start_tree'
#end if
#if $advanced_selector.maximize == 'max':
#if $advanced_selector.cat_selector.conrate == 'no':
-cat $advanced_selector.cat_selector.ratecat
#else if $advanced_selector.cat_selector.conrate == 'yes':
-nocat
#end if
$advanced_selector.gamma
$advanced_selector.nosupport
$advanced_selector.mllen
$advanced_selector.likelihood
$advanced_selector.fastest
$advanced_selector.pseudo
#end if
< '$input' > '$output'
#if $save_logfile:
2> '$log'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_selector|input: aligned.fasta input_selector|select_format: fasta save_logfile: True model_selector|model: model_selector|format: -nt |
name: value name: value |
aligned.fasta value |
| Test-2 |
input_selector|input: aligned.fasta input_selector|select_format: fasta model_selector|model: model_selector|format: -nt |
name: value |
aligned.fasta value |