Repository revision
2:52ac6fde9a5b

Repository 'msstats'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/msstats

MSstats tool metadata
Miscellaneous
MSstats
statistical relative protein significance analysis in DDA, SRM and DIA Mass Spectrometry
msstats
toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.20.1.0
3.20.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.22.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.20.1.0 (this tool)
msstats
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-msstats 3.20.1 package
Functional tests
name inputs outputs required files
Test-1 input|input_src: MSstats
selected_outputs: ['processed_data', 'profile_plot', 'profile_wsum_plot', 'quant_sample_matrix', 'quant_group_long']
input|msstats_input: msstats_testfile.txt
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
msstats_testfile.txt
name
Test-2 input|input_src: MSstats
group|select_outputs: ['residualplot', 'model_qc']
input|msstats_input: msstats_testfile.tsv
group|group_comparison: yes
group|comparison_matrix: comparison_matrix.csv
attributes: name
attributes: name
attributes: name
msstats_testfile.tsv
comparison_matrix.csv
name
Test-3 group|select_outputs: ['qqplot', 'comparison_result']
input|evidence: test_MQ_evidence.tabular
group|group_comparison: yes
input|proteinGroups: test_MQ_proteingroups.tabular
group|comparison_matrix: test_MQ_group12_comparison_matrix.csv
input|annotation: test_MQ_annotation.txt
selected_outputs: ['condition_plot', 'processed_data', 'runlevel_data']
input|input_src: MaxQuant
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
test_MQ_evidence.tabular
test_MQ_annotation.txt
test_MQ_proteingroups.tabular
test_MQ_group12_comparison_matrix.csv
name
Test-4 input|input_src: OpenSWATH
input|evidence: test_swath_input_data.tabular
input|annotation: test_swath_annotations.tabular
attributes: name
attributes: name
test_swath_input_data.tabular
test_swath_annotations.tabular
name
Test-5 group|select_outputs: ['comparison_result', 'volcanoplot', 'residualplot']
input|evidence: test_swath_input_data.tabular
group|group_comparison: yes
group|comparison_matrix: test_swath_group12_comparison_matrix.csv
input|annotation: test_swath_annotations.tabular
selected_outputs: ['r_script', 'processed_data', 'quant_sample_long']
input|input_src: OpenSWATH
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
test_swath_input_data.tabular
test_swath_annotations.tabular
test_swath_group12_comparison_matrix.csv
name