Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.22.0.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/3.20.1.0 (this tool) |
msstats |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-msstats | 3.20.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input|input_src: MSstats selected_outputs: ['processed_data', 'profile_plot', 'profile_wsum_plot', 'quant_sample_matrix', 'quant_group_long'] input|msstats_input: msstats_testfile.txt |
attributes: name attributes: name attributes: name attributes: name attributes: name |
msstats_testfile.txt name |
Test-2 |
input|input_src: MSstats group|select_outputs: ['residualplot', 'model_qc'] input|msstats_input: msstats_testfile.tsv group|group_comparison: yes group|comparison_matrix: comparison_matrix.csv |
attributes: name attributes: name attributes: name |
msstats_testfile.tsv comparison_matrix.csv name |
Test-3 |
group|select_outputs: ['qqplot', 'comparison_result'] input|evidence: test_MQ_evidence.tabular group|group_comparison: yes input|proteinGroups: test_MQ_proteingroups.tabular group|comparison_matrix: test_MQ_group12_comparison_matrix.csv input|annotation: test_MQ_annotation.txt selected_outputs: ['condition_plot', 'processed_data', 'runlevel_data'] input|input_src: MaxQuant |
attributes: name attributes: name attributes: name attributes: name attributes: name |
test_MQ_evidence.tabular test_MQ_annotation.txt test_MQ_proteingroups.tabular test_MQ_group12_comparison_matrix.csv name |
Test-4 |
input|input_src: OpenSWATH input|evidence: test_swath_input_data.tabular input|annotation: test_swath_annotations.tabular |
attributes: name attributes: name |
test_swath_input_data.tabular test_swath_annotations.tabular name |
Test-5 |
group|select_outputs: ['comparison_result', 'volcanoplot', 'residualplot'] input|evidence: test_swath_input_data.tabular group|group_comparison: yes group|comparison_matrix: test_swath_group12_comparison_matrix.csv input|annotation: test_swath_annotations.tabular selected_outputs: ['r_script', 'processed_data', 'quant_sample_long'] input|input_src: OpenSWATH |
attributes: name attributes: name attributes: name attributes: name attributes: name |
test_swath_input_data.tabular test_swath_annotations.tabular test_swath_group12_comparison_matrix.csv name |