Repository revision
0:cf7f80d59099

Repository 'humann_join_tables'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/humann_join_tables

Join (merge) tool metadata
Miscellaneous
Join (merge)
gene, pathway, or taxonomy HUMAnN/MetaPhlAn tables into a single table
humann_join_tables
toolshed.g2.bx.psu.edu/repos/iuc/humann_join_tables/humann_join_tables/3.0.0+galaxy0
3.0.0+galaxy0
humann --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/humann_join_tables/humann_join_tables/3.0.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/humann_join_tables/humann_join_tables/3.0.0+galaxy0 (this tool)
humann_join_tables
Requirements (dependencies defined in the <requirements> tag set)
name version type
humann 3.0.0 package
Additional information about this tool
#import re
mkdir tmp_dir
&&
#for $input in $inputs
ln -s '$input' 'tmp_dir/${re.sub('[^\w\-_.]', '_', input.element_identifier)}' &&
#end for
humann_join_tables
    -i 'tmp_dir'
    -o '$output'
    
None
False
Functional tests
name inputs outputs required files
Test-1 inputs: ['demo_pathabundance.tsv', 'demo_pathcoverage.tsv']
name: value
demo_pathabundance.tsv
demo_pathcoverage.tsv
value