Repository revision
6:a32b531f66a0

Repository 'colibread_lordec'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec

Lordec tool metadata
Miscellaneous
Lordec
is a set a programs for correcting sequencing errors in PacBio reads
lordec
toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.9+galaxy2
0.9+galaxy2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.9+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.9
toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.6
lordec
Requirements (dependencies defined in the <requirements> tag set)
name version type
lordec 0.9 package
Functional tests
name inputs outputs required files
Test-1 program_type_choice|inputs: ['lordec/ill-test-5K-1.fa.gz', 'lordec/ill-test-5K-2.fa.gz']
program_type_choice|i: lordec/coli-pacbio-test-mini.fa.gz
program_type_choice|k: 31
program_type_choice|program_type: correct
name: value
lordec/ill-test-5K-1.fa.gz
lordec/ill-test-5K-2.fa.gz
lordec/coli-pacbio-test-mini.fa.gz
value
Test-2 program_type_choice|i: lordec/corrected_reads.fa
program_type_choice|program_type: trim
name: value
lordec/corrected_reads.fa
value
Test-3 program_type_choice|inputs: ['lordec/ill-test-5K-1.fa.gz', 'lordec/ill-test-5K-2.fa.gz']
program_type_choice|i: lordec/coli-pacbio-test-mini.fa.gz
program_type_choice|program_type: stats
name: value
lordec/ill-test-5K-1.fa.gz
lordec/ill-test-5K-2.fa.gz
lordec/coli-pacbio-test-mini.fa.gz
value