| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0 |
| metaphlan2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| metaphlan2 | 2.6.0 | package |
| bowtie2 | 2.3.0 | package |
| python | 2.7.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: input_sequences.fasta db|bowtie2db: marker_sequences.fasta db|mpa_pkl: marker_metadata.json db|db_selector: history analysis_type|analysis_type_select: rel_ab min_cu_len: 2000 min_alignment_len: 0 ignore_viruses: True ignore_eukaryotes: True ignore_bacteria: True ignore_archaea: True stat_q: 0.1 |
name: value |
input_sequences.fasta marker_sequences.fasta marker_metadata.json value |
| Test-2 |
input_file: input_sequences.fastq.gz db|bowtie2db: marker_sequences.fasta db|mpa_pkl: marker_metadata.json db|db_selector: history analysis_type|analysis_type_select: rel_ab min_cu_len: 2000 min_alignment_len: 0 ignore_viruses: True ignore_eukaryotes: True ignore_bacteria: True ignore_archaea: True stat_q: 0.1 |
name: value |
input_sequences.fastq.gz marker_sequences.fasta marker_metadata.json value |