Repository revision
1:b71c651e7950

Repository 'psm_validation'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/psm_validation

PSM-Fragment Validator tool metadata
Miscellaneous
Validate PSMs against Ion Fragmentation
psmvalidator
toolshed.g2.bx.psu.edu/repos/galaxyp/psm_validation/psmvalidator/1.0.3+galaxy1
1.0.3+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/psm_validation/psmvalidator/1.0.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/psm_validation/psmvalidator/1.0.3
psmvalidator
Requirements (dependencies defined in the <requirements> tag set)
name version type
psm_fragments 1.0.3 package
Additional information about this tool
python '$__tool_directory__/application.py' 
            -d '$mz_db_name'
            -p '$peptide_sequences'
            #if $neutral_loss_ions:
                -n
            #end if
            #if $internal_ions:
                -i
            #end if
            -b $b_ion_run
            -y $y_ion_run
            -e $epsilon
            #if $b_ion_run < 0:
                --test
            #end if
        
    
None
False
Functional tests
name inputs outputs required files
Test-1 mz_db_name: test.db
peptide_sequences: test-peptides.txt
b_ion_run: -99
y_ion_run: -99
neutral_loss_ions: True
internal_ions: True
epsilon: 0.5
name: value
test.db
test-peptides.txt
value