Revision: 1:4d89978c6188

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies

Miscellaneous

Name: dada2: assignTaxonomy and addSpecies

Description: Learn Error rates

Id: dada2_assignTaxonomyAddspecies

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.12+galaxy1

Version: 1.12+galaxy1

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.12+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.12+galaxy0

dada2_assignTaxonomyAddspecies

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.12	package

Functional tests

name	inputs	outputs	required files
Test-1	reference_cond|refFasta: reference.fa reference_cond|taxLevels: Level1,Level2,Level3,Level4,Level5 addSpecies_cond|speciesreference_cond|speciesrefFasta: reference_species.fa reference_cond|reference_select: history addSpecies_cond|addSpecies_select: TRUE seqs: removeBimeraDenovo_F3D0.tab addSpecies_cond|speciesreference_cond|speciesreference_select: history	attributes: name	removeBimeraDenovo_F3D0.tab reference.fa reference_species.fa name
Test-2	reference_cond|refFasta: test_buildid addSpecies_cond|speciesreference_cond|speciesrefFasta: test_buildid reference_cond|reference_select: builtin addSpecies_cond|addSpecies_select: TRUE seqs: removeBimeraDenovo_F3D0.tab addSpecies_cond|speciesreference_cond|speciesreference_select: builtin	attributes: name	removeBimeraDenovo_F3D0.tab name
Test-3	reference_cond|refFasta: reference.fa tryRC: True reference_cond|taxLevels: Level1,Level2,Level3,Level4,Level5 addSpecies_cond|speciesreference_cond|speciesrefFasta: reference_species.fa addSpecies_cond|tryRC: True reference_cond|reference_select: history outputBootstraps: True minBoot: 42 addSpecies_cond|speciesreference_cond|speciesreference_select: history seqs: removeBimeraDenovo_F3D0.tab addSpecies_cond|addSpecies_select: TRUE	attributes: name attributes: name	removeBimeraDenovo_F3D0.tab reference.fa reference_species.fa name