Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/1.8.2+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/1.8.0+galaxy0 |
msstatstmt |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-msstatstmt | 1.8.2 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input|msstatstmt_input: input.msstatstmt.txt input|input_src: MSstatsTMT selected_outputs: ['msstats_log', 'msstatstmt_log', 'r_script', 'ProfilePlot', 'QCPlot'] |
name: value name: value name: value name: value name: value |
input.msstatstmt.txt value |
Test-2 |
input|evidence: evidence.txt input|proteinGroups: proteinGroups.txt input|annotation: annotation.txt input|input_src: MaxQuant out_plots_opt|which_Protein|protein_list: proteinIDs.txt out_plots_opt|which_Protein|select: list group|use_comp_matrix|comparison_matrix: comparison_matrix.txt group|use_comp_matrix|select: true group|selected_group_outputs: ['comparison_result', 'VolcanoPlot', 'ComparisonPlot'] group|group_comparison: true selected_outputs: ProfilePlot |
name: value name: value name: value name: value |
evidence.txt proteinGroups.txt annotation.txt proteinIDs.txt comparison_matrix.txt value |
Test-3 |
input|oms_input: input.oms.txt input|input_src: OpenMS group|selected_group_outputs: ['comparison_result', 'Heatmap'] group|group_comparison: true selected_outputs: r_script |
name: value name: value name: value |
input.oms.txt value |
Test-4 |
input|PSM: input.pd.txt input|annotation: annotation.pd.txt input|input_src: PD selected_outputs: quant |
name: value |
input.pd.txt annotation.pd.txt value |
Test-5 |
input|evidence: evidence.txt input|proteinGroups: proteinGroups.txt input|annotation: annotation.txt input|input_src: MaxQuant out_plots_opt|which_Protein|select: allonly selected_outputs: ProfilePlot |
name: value |
evidence.txt proteinGroups.txt annotation.txt value |