Repository revision
12:1d06c8b38e77

Repository 'rnaspades'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rnaspades

rnaSPAdes tool metadata
Miscellaneous
rnaSPAdes
de novo transcriptome assembler
rnaspades
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy2
3.15.4+galaxy2
spades.py --version 2>&1 | awk -F 'v' '{print $2}'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.5+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.3
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.2
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0
rnaspades
Requirements (dependencies defined in the <requirements> tag set)
name version type
spades 3.15.4 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 singlePaired|input1: ecoli_1K.fastq.gz
singlePaired|sPaired: paired_interlaced
name: value
ecoli_1K.fastq.gz
value
Test-2 singlePaired|input1: ecoli_1K_1.fastq.gz
singlePaired|input2: ecoli_1K_2.fastq.gz
singlePaired|sPaired: paired
phred_offset: 33
ss: fr
optional_output: ['hft', 'l', 'sft', 'tr', 'tp']
name: value
name: value
name: value
name: value
name: value
ecoli_1K_1.fastq.gz
ecoli_1K_2.fastq.gz
value
Test-3 singlePaired|input1: ecoli_1K_1.fasta.gz
singlePaired|input2: ecoli_1K_2.fasta.gz
singlePaired|sPaired: paired
name: value
ecoli_1K_1.fasta.gz
ecoli_1K_2.fasta.gz
value
Test-4 singlePaired|input: list:paired collection
singlePaired|sPaired: paired_collection
name: value
ecoli_1K_1.fastq.gz
ecoli_1K_2.fastq.gz
value
Test-5 singlePaired|input1: ecoli_1K_1.fasta.gz
singlePaired|input2: ecoli_1K_2.fasta.gz
singlePaired|sPaired: paired
arf|flrna: ecoli_1K.fasta.gz
arf|nanopore: ecoli_1K.fastq.gz
arf|pacbio: ecoli_1K.fastq.gz
arf|trusted_contigs: ecoli_1K.fasta.gz
name: value
ecoli_1K_1.fasta.gz
ecoli_1K_2.fasta.gz
ecoli_1K.fasta.gz
ecoli_1K.fastq.gz
value