if [ -z "\$ARROW_GLOBAL_CONFIG_PATH" ]; then
        echo "__default: local" > '.auth.yml' &&
        echo "local:" >> '.auth.yml' &&
        echo "    url: \"\$GALAXY_WEBAPOLLO_URL\"" >> '.auth.yml' &&
        echo "    username: \"\$GALAXY_WEBAPOLLO_USER\"" >> '.auth.yml' &&
        echo "    password: \"\$GALAXY_WEBAPOLLO_PASSWORD\"" >> '.auth.yml' &&

        export ARROW_GLOBAL_CONFIG_PATH='.auth.yml'
      ; fi &&
  

#if str($ask_one) == "yes":
    #if str($ask_two) == "yes":
        ## Nope, still don't trust them to not be dumb (or malicious), so we backup first.
        python '$__tool_directory__/export.py'
        

#if $org_source.source_select == "auto_json":
    --org_json '${org_source.org_file}'
#elif $org_source.source_select == "select":
    --org_id '${org_source.org_select}'
#else:
    --org_raw '${org_source.org_raw}'
#end if

  
        --gff '$gff_out'
        --fasta_pep '$fasta_pep'
        --fasta_cds '$fasta_cds'
        --fasta_cdna '$fasta_cdna'
        --vcf '$vcf_out'
        --json '$json_out'
        '$__user_email__'

        &&

        ## Now we delete
        python '$__tool_directory__/delete_organism.py'
        

#if $org_source.source_select == "auto_json":
    --org_json '${org_source.org_file}'
#elif $org_source.source_select == "select":
    --org_id '${org_source.org_select}'
#else:
    --org_raw '${org_source.org_raw}'
#end if

  
        '$__user_email__'
        >> '$output';
    #else
        echo "Nothing to do" > '$output';
    #end if
#else
    echo "Nothing to do" > '$output';
#end if