Repository revision
6:9aaa46d45472

Repository 'unipept'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/unipept

Unipept tool metadata
Miscellaneous
Unipept
retrieve taxonomy for peptides
unipept
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0
4.3.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.0
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/1.1.0
toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/0.1.0
unipept
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3 package
Functional tests
name inputs outputs required files
Test-1 peptide_src|column: 2
peptide_src|input_tsv: tryptic.tsv
unipept|extra: True
peptide_src|fmt: tabular
unipept|api: pept2lca
selected_outputs: ['tsv', 'unmatched']
unipept|names: True
attributes: name
attributes: name
tryptic.tsv
name
Test-2 unipept|equate_il: True
peptide_src|fmt: fasta
unipept|api: pept2lca
selected_outputs: ['json', 'tsv']
unipept|names: True
peptide_src|input_fasta: peptide.fa
unipept|extra: True
attributes: name
attributes: name
peptide.fa
name
Test-3 unipept|equate_il: True
peptide_src|fmt: fasta
unipept|api: pept2taxa
selected_outputs: tsv
unipept|names: False
peptide_src|input_fasta: peptide.fa
unipept|extra: False
attributes: name
peptide.fa
name
Test-4 peptide_src|column: 2
peptide_src|input_tsv: input.tsv
unipept|extra: True
peptide_src|fmt: tabular
unipept|api: pept2funct
selected_outputs: ['tsv', 'ec_tsv', 'go_tsv', 'ipr_tsv', 'unmatched']
attributes: name
attributes: name
attributes: name
attributes: name
input.tsv
name