Repository revision
3:289b7d6b69a4

Repository 'stacks2_clonefilter'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter

Stacks2: clone filter tool metadata
Miscellaneous
Identify PCR clones
stacks2_clonefilter
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.55+galaxy0
2.55+galaxy0
process_radtags -h |& grep process_radtags | head -n 1 | cut -d" " -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.55+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.55+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.53+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_clonefilter/stacks2_clonefilter/2.4+galaxy0
stacks2_clonefilter
Requirements (dependencies defined in the <requirements> tag set)
name version type
stacks 2.55 package
python 3.7 package
findutils 4.6.0 package
Functional tests
name inputs outputs required files
Test-1 input_type|fqinputs: clonefilter/R1_0001.1.fq.gz
input_type|input_type_select: single
oligo_len_1: 6
add_log: True
name: value
name: value
clonefilter/R1_0001.1.fq.gz
value
Test-2 input_type|fqinputs: clonefilter/R1_0001.1.fq.gz
input_type|barcode_encoding: --index_null
input_type|input_type_select: single
capture: True
oligo_len_1: 6
name: value
name: value
name: value
clonefilter/R1_0001.1.fq.gz
value
Test-3 input_type|fqinputs: paired collection
input_type|input_type_select: paired
oligo_len_1: 6
name: value
clonefilter/R1_0001.1.fq.gz
clonefilter/R2_0001.2.fq.gz
value
Test-4 input_type|fqinputs: paired collection
input_type|input_type_select: paired
capture: True
oligo_len_1: 6
oligo_len_2: 6
retain_oligo: True
name: value
clonefilter/R1_0001.1.fq.gz
clonefilter/R2_0001.2.fq.gz
value