| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_group/mothur_get_group/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_group/mothur_get_group/1.36.1.0 |
| mothur_get_group |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$shared' shared.dat &&
echo 'get.group(
shared=shared.dat
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log &&
## parse relevant output from logfile to file
cat mothur.*.logfile
| head -n-6
| sed '1,30d'
> "$bootgroups"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
shared: amazon.an.shared savelog: True |
name: value name: value |
amazon.an.shared value |