Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.4+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.2 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.1b2 |
toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/0.1.0 |
hmmer_hmmsearch |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hmmer | 3.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
hmmfile: globins4.hmm seqdb: uniprot_matches.fasta notextw: True seed: 4 |
name: value name: value name: value name: value |
globins4.hmm uniprot_matches.fasta value |
Test-2 |
hmmfile: globins4.hmm seqdb: uniprot_matches.fasta oformat: notextw: True seed: 4 |
name: value |
globins4.hmm uniprot_matches.fasta value |
Test-3 |
hmmfile: fn3.hmm seqdb: uniprot_matches.fasta oformat: notextw: True repopt|incE: 0.00001 repopt|incdomE: 0.0001 seed: 4 |
name: value |
fn3.hmm uniprot_matches.fasta value |
Test-4 |
hmmfile: fn3.hmm seqdb: uniprot_matches.fasta oformat: notextw: True repopt|repopt_sel: --cut_ga seed: 4 |
name: value |
fn3.hmm uniprot_matches.fasta value |