Galaxy |

hmmsearch tool metadata

Miscellaneous

Name: hmmsearch

Description: search profile(s) against a sequence database

Id: hmmer_hmmsearch

Guid: toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.4+galaxy0

Version: 3.4+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.4+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3.2+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3.2+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.3

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/3.1b2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmsearch/hmmer_hmmsearch/0.1.0

hmmer_hmmsearch

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hmmer

3.4

package

Functional tests

name

inputs

outputs

required files

Test-1

hmmfile: globins4.hmm
seqdb: uniprot_matches.fasta
notextw: True
seed: 4

name: value
name: value
name: value
name: value

globins4.hmm
uniprot_matches.fasta
value

Test-2

hmmfile: globins4.hmm
seqdb: uniprot_matches.fasta
oformat:
notextw: True
seed: 4

name: value

globins4.hmm
uniprot_matches.fasta
value

Test-3

hmmfile: fn3.hmm
seqdb: uniprot_matches.fasta
oformat:
notextw: True
repopt|incE: 0.00001
repopt|incdomE: 0.0001
seed: 4

name: value

fn3.hmm
uniprot_matches.fasta
value

Test-4

hmmfile: fn3.hmm
seqdb: uniprot_matches.fasta
oformat:
notextw: True
repopt|repopt_sel: --cut_ga
seed: 4

name: value

fn3.hmm
uniprot_matches.fasta
value