| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/5.0.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.12.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.2.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.0 |
| meme_fimo |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| graphicsmagick | 1.3.23 | package |
| meme | 4.12.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
output_options|gff_outfile: True scanrc: True input_motifs: meme_fimo_input_1.xml options_type|options_type_selector: basic output_options|xml_outfile: True non_commercial_use: True fasta_type|fasta_type_selector: history output_options|html_outfile: True fasta_type|input_database: hsa_chrM.fa |
attributes: name attributes: name attributes: name attributes: name |
meme_fimo_input_1.xml hsa_chrM.fa name |
| Test-2 |
options_type|bgfile_type|bgfile: fimo_background_probs_hsa_chrM.txt output_options|gff_outfile: True scanrc: True output_options|xml_outfile: True input_motifs: dreme_fimo_input_1.xml non_commercial_use: True options_type|options_type_selector: advanced fasta_type|fasta_type_selector: history output_options|html_outfile: True options_type|bgfile_type|bgfile_type_selector: bgfile fasta_type|input_database: hsa_chrM.fa |
attributes: name attributes: name attributes: name attributes: name |
dreme_fimo_input_1.xml hsa_chrM.fa fimo_background_probs_hsa_chrM.txt name |
| Test-3 |
options_type|options_type_selector: advanced output_options|gff_outfile: False output_options|xml_outfile: True options_type|motifs_cond|motifs_0|motif: ACTAAYH input_motifs: dreme_fimo_input_1.xml non_commercial_use: True options_type|motifs_cond|motif_selector: yes scanrc: True fasta_type|fasta_type_selector: history output_options|html_outfile: True options_type|bgfile_type|bgfile_type_selector: uniform_distr options_type|thresh: 0.01 fasta_type|input_database: hsa_chrM.fa |
attributes: name attributes: name attributes: name |
dreme_fimo_input_1.xml hsa_chrM.fa name |