Manipulate loom object tool metadata

Miscellaneous

Name: Manipulate loom object

Description: Add layers, or row/column attributes to a loom file

Id: modify_loom

Guid: toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy4

Version: 0.6.22.post1+galaxy4

Version command string: python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.7.4+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy4 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy3

toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy1

modify_loom

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

anndata

0.6.22.post1

package

loompy

2.0.17

package

h5py

2.9.0

package

Functional tests

name

inputs

outputs

required files

Test-1

input: addtest.loom
which_add|cols: cols.tsv
which_add|add_type: cols

attributes: name

addtest.loom
cols.tsv
name

Test-2

which_add|rows: rows.tsv
input: addtest.loom
which_add|add_type: rows

attributes: name

addtest.loom
rows.tsv
name

Test-3

input: addtest.loom
which_add|layers: addlayer1.tsv
which_add|add_type: layers

attributes: name

addtest.loom
addlayer1.tsv
name