Repository revision
3:eeab712b0b99

Repository 'modify_loom'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/modify_loom

Manipulate loom object tool metadata
Miscellaneous
Add layers, or row/column attributes to a loom file
modify_loom
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy4
0.6.22.post1+galaxy4
python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.7.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy4 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/modify_loom/modify_loom/0.6.22.post1+galaxy1
modify_loom
Requirements (dependencies defined in the <requirements> tag set)
name version type
anndata 0.6.22.post1 package
loompy 2.0.17 package
h5py 2.9.0 package
Functional tests
name inputs outputs required files
Test-1 input: addtest.loom
which_add|cols: cols.tsv
which_add|add_type: cols
attributes: name
addtest.loom
cols.tsv
name
Test-2 which_add|rows: rows.tsv
input: addtest.loom
which_add|add_type: rows
attributes: name
addtest.loom
rows.tsv
name
Test-3 input: addtest.loom
which_add|layers: addlayer1.tsv
which_add|add_type: layers
attributes: name
addtest.loom
addlayer1.tsv
name