| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.18.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.4.0 |
| fastp |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastp | 0.24.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single |
name: value name: value name: value |
R1.fq value |
| Test-2 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection output_options|report_json: False |
name: value |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
| Test-3 |
single_paired|in1: R1.fq single_paired|adapter_trimming_options|adapter_sequence1: ATCG single_paired|single_paired_selector: single output_options|report_json: False |
name: value |
R1.fq value |
| Test-4 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single read_mod_options|umi_processing|umi: True read_mod_options|umi_processing|umi_loc: read1 read_mod_options|umi_processing|umi_len: 8 output_options|report_json: False |
name: value |
R1.fq value |
| Test-5 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single read_mod_options|umi_processing|umi: True read_mod_options|umi_processing|umi_loc: read1 read_mod_options|umi_processing|umi_len: 12 output_options|report_json: False |
name: value |
R1.fq value |
| Test-6 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection read_mod_options|umi_processing|umi: True read_mod_options|umi_processing|umi_loc: read1 read_mod_options|umi_processing|umi_len: 8 output_options|report_json: False |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq |
|
| Test-7 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection read_mod_options|umi_processing|umi: True read_mod_options|umi_processing|umi_loc: read2 read_mod_options|umi_processing|umi_len: 8 |
name: value |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
| Test-8 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single output_options|report_html: False |
name: value name: value |
R1.fq value |
| Test-9 |
single_paired|in1: R1.fq.gz single_paired|single_paired_selector: single read_mod_options|polyg_tail_trimming|poly_g_min_len: 10 read_mod_options|polyg_tail_trimming|trimming_select: -g |
name: value name: value |
R1.fq.gz value |
| Test-10 |
single_paired|in1: R1.fq.gz single_paired|single_paired_selector: single read_mod_options|polyg_tail_trimming|trimming_select: -G read_mod_options|polyx_tail_trimming|poly_x_min_len: 10 read_mod_options|polyx_tail_trimming|polyx_trimming_select: -x |
name: value name: value |
R1.fq.gz value |
| Test-11 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection |
bwa-mem-fastq1.fq bwa-mem-fastq2_too_long.fq |
|
| Test-12 |
single_paired|paired_input: paired collection single_paired|merge_reads|merge: --merge single_paired|single_paired_selector: paired_collection output_options|report_html: False output_options|report_json: False |
name: value |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
| Test-13 |
single_paired|paired_input: paired collection single_paired|merge_reads|include_unmerged: True single_paired|merge_reads|merge: --merge single_paired|single_paired_selector: paired_collection output_options|report_html: False |
name: value name: value |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq value |
| Test-14 |
single_paired|paired_input: paired collection single_paired|merge_reads|merge: --merge single_paired|single_paired_selector: paired_collection output_options|report_html: False output_options|report_json: False |
name: value |
bwa-mem-fastq1.fq.gz bwa-mem-fastq2.fq.gz value |
| Test-15 |
single_paired|paired_input: paired collection single_paired|merge_reads|include_unmerged: True single_paired|merge_reads|merge: --merge single_paired|single_paired_selector: paired_collection output_options|report_html: False |
name: value name: value |
bwa-mem-fastq1.fq.gz bwa-mem-fastq2.fq.gz value |
| Test-16 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection output_options|report_json: False |
name: value |
bwa-mem-fastq-paired-collection/input_forward.fastqsanger.gz bwa-mem-fastq-paired-collection/input_reverse.fastqsanger.gz value |