Galaxy |

Repository revision

Revision: 7:fadd03fbc4f5

Repository 'hicexplorer_chicqualitycontrol'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol

chicQualityControl tool metadata

Miscellaneous

Name: chicQualityControl

Description: generates an estimate of the quality of each viewpoint

Id: hicexplorer_chicqualitycontrol

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.6+galaxy1

Version: 3.6+galaxy1

Version command string: chicQualityControl --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.7.2+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.6+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicqualitycontrol/hicexplorer_chicqualitycontrol/3.3.1.0

hicexplorer_chicqualitycontrol

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.6

package

Functional tests

name

inputs

outputs

required files

Test-1

matrix_h5_cooler_multiple: ['cHi-C/FL-E13-5_chr1.cool', 'cHi-C/MB-E10-5_chr1.cool']
referencePoints: cHi-C/referencePoints.bed
sparsity: 0.05

name: value
name: value
name: value
name: value
name: value
name: value
name: value

cHi-C/FL-E13-5_chr1.cool
cHi-C/MB-E10-5_chr1.cool
cHi-C/referencePoints.bed
value