| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_parseheaders/presto_parseheaders/0.6.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_parseheaders/presto_parseheaders/0.6.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_parseheaders/presto_parseheaders/0.5.4 |
| presto_parseheaders |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| presto | 0.6.2 | package |
| Additional information about this tool |
ln -s '$fastq_in' in.fastq &&
ParseHeaders.py $cc.command
-s in.fastq
#if $varExists('cc.f')
-f $cc.f
#end if
#if $varExists('cc.u')
-u $cc.u
#end if
#if $varExists('cc.act')
--act $cc.act
#end if
#if $varExists('cc.k')
-k $cc.k
#end if
--outdir=.
--outname=tmp &&
mv ./tmp_*header* '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: FOO BAR cc|u: hello world cc|command: add |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-2 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: CONSCOUNT cc|act: sum cc|command: collapse |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-3 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: PRCONS cc|k: PRIMER cc|act: set cc|command: copy |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-4 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: CONSCOUNT SEQORIENT cc|command: delete |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-5 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: CONSCOUNT cc|command: expand |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-6 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: PRCONS cc|k: PRIMER cc|act: set cc|command: rename |
name: value |
presto_parseheaders_test_in.fastq value |
| Test-7 |
fastq_in: presto_parseheaders_test_in.fastq cc|f: PRCONS PRIMER cc|command: table |
name: value |
presto_parseheaders_test_in.fastq value |