| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.1.0 |
| FalseDiscoveryRate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: FalseDiscoveryRate_OMSSA.idXML PSM: True protein: False FDR|PSM: 1.0 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: False algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_OMSSA.idXML value |
| Test-2 |
in: FalseDiscoveryRate_OMSSA.idXML PSM: True protein: False FDR|PSM: 1.0 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: False algorithm|treat_runs_separately: True algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_OMSSA.idXML value |
| Test-3 |
in: FalseDiscoveryRate_OMSSA.idXML PSM: True protein: False FDR|PSM: 1.0 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: True algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_OMSSA.idXML value |
| Test-4 |
in: FalseDiscoveryRate_OMSSA_4.idXML PSM: True protein: False FDR|PSM: 1.0 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: True algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_OMSSA_4.idXML value |
| Test-5 |
in: FalseDiscoveryRate_5_input.idXML PSM: False protein: True FDR|PSM: 1.0 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: False algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: True algorithm|conservative: True adv_opts_cond|force: True adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_5_input.idXML value |
| Test-6 |
in: FalseDiscoveryRate_6_input.idXML PSM: True protein: False FDR|PSM: 0.05 FDR|protein: 1.0 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: False algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_6_input.idXML value |
| Test-7 |
in: FalseDiscoveryRate_7_input.idXML PSM: False protein: True FDR|PSM: 1.0 FDR|protein: 0.3 FDR|cleanup|remove_proteins_without_psms: True FDR|cleanup|remove_psms_without_proteins: True FDR|cleanup|remove_spectra_without_psms: True algorithm|no_qvalues: False algorithm|use_all_hits: False algorithm|split_charge_variants: False algorithm|treat_runs_separately: False algorithm|add_decoy_peptides: False algorithm|add_decoy_proteins: False algorithm|conservative: True adv_opts_cond|force: True adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FalseDiscoveryRate_7_input.idXML value |