| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.15.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.15.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.3.0 |
| bcftools_consensus |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.15.1 | package |
| htslib | 1.15.1 | package |
| samtools | 1.15.1 | package |
| gawk | 5.0.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_default|mask: consensus.tab chain: True |
name: value name: value |
consensus.vcf consensus.fa consensus.tab value |
| Test-2 |
input_file: consensus.vcf reference_source|fasta_ref: consensus reference_source|reference_source_selector: cached sec_default|mask: consensus.tab chain: True |
name: value name: value |
consensus.vcf consensus.tab value |
| Test-3 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_default|mask: consensus.tab chain: False rename: True |
name: value |
consensus.vcf consensus.fa consensus.tab value |
| Test-4 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_restrict|include: TYPE="snp" |
name: value |
consensus.vcf consensus.fa value |
| Test-5 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history absent: W sec_restrict|include: TYPE="snp" |
name: value |
consensus.vcf consensus.fa value |
| Test-6 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_default|mark_del: DEL sec_default|mark_ins: uc sec_default|mark_snv: uc sec_restrict|include: TYPE="snp" |
name: value |
consensus.vcf consensus.fa value |