Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.15.1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.4.0 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.3.1 |
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.3.0 |
bcftools_consensus |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bcftools | 1.10 | package |
htslib | 1.10 | package |
samtools | 1.10 | package |
gawk | 5.0.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_default|mask: consensus.tab chain: True |
name: value name: value |
consensus.vcf consensus.fa consensus.tab value |
Test-2 |
input_file: consensus.vcf reference_source|fasta_ref: consensus reference_source|reference_source_selector: cached sec_default|mask: consensus.tab chain: True |
name: value name: value |
consensus.vcf consensus.tab value |
Test-3 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_default|mask: consensus.tab chain: False rename: True |
name: value |
consensus.vcf consensus.fa consensus.tab value |
Test-4 |
input_file: consensus.vcf reference_source|fasta_ref: consensus.fa reference_source|reference_source_selector: history sec_restrict|include: TYPE="snp" |
name: value |
consensus.vcf consensus.fa value |