| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.5.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.4.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.4.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/0.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/0.0.1 |
| bamtools |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bamtools | 2.4.0 | package |
| samtools | 1.4.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
analysis_type|format_type|format_type_selector: pileup input_bams: bamtools-input1.bam analysis_type|analysis_type_selector: convert analysis_type|format_type|reference_source|ref_file: bamtools-fasta.fa analysis_type|format_type|reference_source|reference_source_selector: history analysis_type|format_type|mapqual: True |
attributes: name |
bamtools-input1.bam bamtools-fasta.fa name |
| Test-2 |
analysis_type|analysis_type_selector: count input_bams: bamtools-input1.bam |
attributes: name |
bamtools-input1.bam name |
| Test-3 |
analysis_type|analysis_type_selector: coverage input_bams: bamtools-input1.bam |
attributes: name |
bamtools-input1.bam name |
| Test-4 |
analysis_type|analysis_type_selector: header input_bams: bamtools-input1.bam |
attributes: name |
bamtools-input1.bam name |