| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/yating-l/psltobigpsl/pslToBigPsl/0.1.0 (this tool) |
| pslToBigPsl |
| Requirements (dependencies defined in the <requirements> tag set) |
| Additional information about this tool |
$__tool_directory__/pslToBigPsl
'${input}'
#if $add_input.input_type == "both"
-cds='${input_cds}'
-fa='${input_fa}'
#elif $add_input.input_type == "fa"
-fa='${input_fa}'
#elif $add_input.input_type == "cds"
-cds='${input_cds}'
#end if
output
&& sort -k1,1 -k2,2n output > '${output_sorted}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: amaVit1_Gallus_gallus.psl add_input|input_type: no |
output_sorted: out.bigpsl |
amaVit1_Gallus_gallus.psl out.bigpsl |
| Test-2 |
input: amaVit1_Gallus_gallus.psl add_input|input_fa: Gallus_gallus_RefSeq.fa add_input|input_type: fa |
output_sorted: out_fa.bigpsl |
amaVit1_Gallus_gallus.psl Gallus_gallus_RefSeq.fa out_fa.bigpsl |
| Test-3 |
input: amaVit1_Gallus_gallus.psl add_input|input_cds: Gallus_gallus_RefSeq.cds add_input|input_type: cds |
output_sorted: out_cds.bigpsl |
amaVit1_Gallus_gallus.psl Gallus_gallus_RefSeq.cds out_cds.bigpsl |
| Test-4 |
input: amaVit1_Gallus_gallus.psl add_input|input_fa: Gallus_gallus_RefSeq.fa add_input|input_type: both add_input|input_cds: Gallus_gallus_RefSeq.cds |
output_sorted: out_both.bigpsl |
amaVit1_Gallus_gallus.psl Gallus_gallus_RefSeq.fa Gallus_gallus_RefSeq.cds out_both.bigpsl |