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Repository revision

Revision: 7:883842b81796

Repository 'align_back_trans'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans

Thread nucleotides onto a protein alignment (back-translation) tool metadata

Miscellaneous

Description: Gives a codon aware alignment

Id: align_back_trans

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10

Version: 0.0.10

Version command string: python $__tool_directory__/align_back_trans.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.9

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.8

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.7

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.6

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.4

toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.3

align_back_trans

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

biopython

1.67

package

Functional tests

name

inputs

outputs

required files

Test-1

prot_align: demo_prot_align.fasta
table: 0
nuc_file: demo_nucs.fasta

name: value

demo_prot_align.fasta
demo_nucs.fasta
value

Test-2

prot_align: demo_prot_align.fasta
table: 11
nuc_file: demo_nucs_trailing_stop.fasta

name: value

demo_prot_align.fasta
demo_nucs_trailing_stop.fasta
value