Repository revision
7:883842b81796

Repository 'align_back_trans'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans

Thread nucleotides onto a protein alignment (back-translation) tool metadata
Miscellaneous
Gives a codon aware alignment
align_back_trans
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10
0.0.10
python $__tool_directory__/align_back_trans.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10 (this tool)
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.9
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.8
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.7
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.6
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.4
toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.3
align_back_trans
Requirements (dependencies defined in the <requirements> tag set)
name version type
biopython 1.67 package
Additional information about this tool
python $__tool_directory__/align_back_trans.py $prot_align.ext '$prot_align' '$nuc_file' '$out_nuc_align' '$table'
    
None
False
Functional tests
name inputs outputs required files
Test-1 prot_align: demo_prot_align.fasta
table: 0
nuc_file: demo_nucs.fasta
name: value
demo_prot_align.fasta
demo_nucs.fasta
value
Test-2 prot_align: demo_prot_align.fasta
table: 11
nuc_file: demo_nucs_trailing_stop.fasta
name: value
demo_prot_align.fasta
demo_nucs_trailing_stop.fasta
value