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Repository revision

Revision: 3:fd8f1ac582bd

Repository 'presto_parselog'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/presto_parselog

pRESTO ParseLog tool metadata

Miscellaneous

Name: pRESTO ParseLog

Description: Create tabular report from pRESTO log file

Id: presto_parselog

Guid: toolshed.g2.bx.psu.edu/repos/iuc/presto_parselog/presto_parselog/0.6.2+galaxy0

Version: 0.6.2+galaxy0

Version command string: ParseLog.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/presto_parselog/presto_parselog/0.6.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/presto_parselog/presto_parselog/0.6.2

toolshed.g2.bx.psu.edu/repos/iuc/presto_parselog/presto_parselog/0.5.4

presto_parselog

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

presto

0.6.2

package

Additional information about this tool

Command:

ParseLog.py 
          -l '$log_file'
          -f $fields
          --outdir=.
          --outname=tmp

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

log_file: presto_parselog_test_in.txt
fields: ID QUALITY

name: value

presto_parselog_test_in.txt
value