| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/iedb_api/iedb_api/2.15.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/iedb_api/iedb_api/2.15.0 (this tool) |
| iedb_api |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sequence|seq_text: SLYNTVATLYCVHQRIDV prediction|alleles|allele_text: HLA-A*01:01,9 sequence|seqsrc: entry prediction|tool: mhci prediction|alleles|allelesrc: entry prediction|method: recommended |
attributes: name |
name |
| Test-2 |
prediction|alleles|allele_file: alleles.tsv sequence|seqsrc: fasta prediction|tool: mhci prediction|alleles|allelesrc: history sequence|seq_fasta: seqs.fa prediction|method: recommended |
attributes: name |
alleles.tsv seqs.fa name |
| Test-3 |
sequence|seq_tsv: seqs.tsv prediction|alleles|allele_file: alleles.tsv sequence|id_col: 1 sequence|pep_col: 3 sequence|seqsrc: tabular prediction|tool: mhci prediction|alleles|allelesrc: history prediction|method: recommended |
attributes: name |
alleles.tsv seqs.tsv name |
| Test-4 |
sequence|seq_text: SLYNTVATLYCVHQRIDV prediction|alleles|allele_text: DPA1*01/DPB1*04:01 prediction|lengths: asis sequence|seqsrc: entry prediction|tool: mhcii prediction|alleles|allelesrc: entry prediction|method: recommended |
attributes: name |
name |
| Test-5 |
sequence|seq_text: SLYNTVATLYCVHQRIDV prediction|proteasome: constitutive sequence|seqsrc: entry prediction|alleles|allele_text: HLA-A*01:01,8 HLA-A*02:01,9 prediction|alleles|allelesrc: entry prediction|tool: processing prediction|method: recommended |
attributes: name |
name |
| Test-6 |
sequence|seq_text: SLYNTVATLYCVHQRIDV prediction|alleles|allele_text: HLA-A*02:01,9 sequence|seqsrc: entry prediction|tool: mhcnp prediction|alleles|allelesrc: entry prediction|method: mhcnp |
attributes: name |
name |
| Test-7 |
prediction|tool: bcell sequence|seq_text: VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTE prediction|method: Emini sequence|seqsrc: entry |
attributes: name |
name |
| Test-8 |
prediction|tool: bcell prediction|window_size: 9 sequence|seq_fasta: bcell.fa prediction|method: Kolaskar-Tongaonkar sequence|seqsrc: fasta |
attributes: name |
bcell.fa name |