Repository revision
20:fe727a9496ea

Repository 'scanpy_run_tsne'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne

Scanpy RunTSNE tool metadata
Miscellaneous
visualise cell clusters using tSNE
scanpy_run_tsne
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.7.2+galaxy0
1.7.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.8.1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy2
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy10
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy8
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy6
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.2+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.3.2+galaxy1
scanpy_run_tsne
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 0.4.0 package
Functional tests
name inputs outputs required files
Test-1 input_obj_file: find_cluster.h5
input_format: anndata
output_format: anndata
embeddings: True
settings|perplexity_file: perplexity.txt
settings|random_seed: 0
settings|default: False
name: value
name: value
find_cluster.h5
perplexity.txt
value
Test-2 input_obj_file: find_cluster.h5
input_format: anndata
output_format: anndata
embeddings: True
settings|perplexity: 30
settings|random_seed: 0
settings|default: False
name: value
name: value
find_cluster.h5
value