Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_fragments/mothur_cluster_fragments/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_fragments/mothur_cluster_fragments/1.36.1.0 |
mothur_cluster_fragments |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$fasta' fasta.dat && ln -s '$names' names.dat && ln -s '$count' count.dat && echo 'cluster.fragments( fasta=fasta.dat, diffs=$diffs, percent=$percent, #if $count: count=count.dat, #end if name=names.dat )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta: amazon.fasta names: amazon1.names savelog: True |
name: value name: value name: value |
amazon.fasta amazon1.names value |