Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.6.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.6.0.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.3.0.0 |
pepquery |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
pepquery | 1.6.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
req_inputs|input_type|input_type_selector: peptide req_inputs|spectrum_file: iTRAQ_f4.mgf ms_params|search|min_peaks: 10 req_inputs|db_file: Uniprot.fasta ms_params|digestion|enzyme: 0 modifications|aa: True ms_params|tolerance_params|precursor_unit: ppm ms_params|tolerance_params|tolerance: 0.6 req_inputs|input_type|multiple|input: ELGSSDLTAR modifications|fixed_mod: ['6', '103', '157'] modifications|max_mods: 3 modifications|unmodified: False ms_params|search|max_charge: 3 ms_params|search|frag_method: 1 ms_params|search|max_length: 45 ms_params|search|min_score: 12 req_inputs|input_type|multiple|peptide_input_selector: single ms_params|digestion|max_missed_cleavages: 2 ms_params|search|num_random_peptides: 1000 ms_params|search|scoring_method: 1 modifications|var_mod: 117 report_spectrum_file: True ms_params|search|min_charge: 2 ms_params|tolerance_params|precursor_tolerance: 10 |
attributes: name |
Uniprot.fasta iTRAQ_f4.mgf name |
Test-2 |
req_inputs|input_type|input_type_selector: peptide req_inputs|spectrum_file: iTRAQ_f4.mgf ms_params|search|min_peaks: 10 req_inputs|db_file: Uniprot.fasta ms_params|digestion|enzyme: 0 modifications|aa: True ms_params|tolerance_params|precursor_unit: ppm ms_params|tolerance_params|tolerance: 0.6 req_inputs|input_type|multiple|input: novel_peptides modifications|fixed_mod: ['6', '103', '157'] modifications|max_mods: 3 modifications|unmodified: False ms_params|search|max_charge: 3 ms_params|search|frag_method: 1 ms_params|search|max_length: 45 ms_params|search|min_score: 12 req_inputs|input_type|multiple|peptide_input_selector: multiple ms_params|digestion|max_missed_cleavages: 2 ms_params|search|num_random_peptides: 1000 ms_params|search|scoring_method: 1 modifications|var_mod: 117 report_spectrum_file: True ms_params|search|min_charge: 2 ms_params|tolerance_params|precursor_tolerance: 10 |
attributes: name |
novel_peptides Uniprot.fasta iTRAQ_f4.mgf name |
Test-3 |
req_inputs|input_type|input_type_selector: 1 req_inputs|spectrum_file: iTRAQ_f4.mgf ms_params|search|min_peaks: 10 req_inputs|db_file: Uniprot.fasta req_inputs|input_type|multiple|protein_input_selector: multiple ms_params|digestion|enzyme: 0 modifications|aa: True ms_params|tolerance_params|precursor_unit: ppm ms_params|tolerance_params|tolerance: 0.6 req_inputs|input_type|multiple|input: novel_proteins.fa modifications|fixed_mod: ['6', '103', '157'] modifications|max_mods: 3 modifications|unmodified: False ms_params|search|max_charge: 3 ms_params|search|frag_method: 1 ms_params|search|max_length: 45 ms_params|search|min_score: 12 ms_params|digestion|max_missed_cleavages: 2 ms_params|search|num_random_peptides: 1000 ms_params|search|scoring_method: 1 modifications|var_mod: 117 report_spectrum_file: True ms_params|search|min_charge: 2 ms_params|tolerance_params|precursor_tolerance: 10 |
attributes: name |
novel_proteins.fa Uniprot.fasta iTRAQ_f4.mgf name |
Test-4 |
req_inputs|input_type|input_type_selector: 2 req_inputs|spectrum_file: iTRAQ_f4.mgf ms_params|search|min_peaks: 10 req_inputs|db_file: Uniprot.fasta ms_params|digestion|enzyme: 0 modifications|aa: True ms_params|tolerance_params|precursor_unit: ppm ms_params|tolerance_params|tolerance: 0.6 modifications|fixed_mod: ['6', '103', '157'] modifications|max_mods: 3 modifications|unmodified: False ms_params|search|max_charge: 3 ms_params|search|frag_method: 1 ms_params|search|max_length: 45 ms_params|search|min_score: 12 req_inputs|input_type|input: gaactgggcagcagcgatctgaccgcgcgcagcccgtatcgcgaatttaccgatcatctggtgaaa ms_params|digestion|max_missed_cleavages: 2 ms_params|search|num_random_peptides: 1000 ms_params|search|scoring_method: 1 modifications|var_mod: 117 report_spectrum_file: True ms_params|search|min_charge: 2 ms_params|tolerance_params|precursor_tolerance: 10 |
attributes: name |
Uniprot.fasta iTRAQ_f4.mgf name |