| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.10 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.3.0 |
| bcftools_convert_to_vcf |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.10 | package |
| htslib | 1.10 | package |
| samtools | 1.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
convert|input_file: convert.gs.gt.gen convert|input_sample: convert.gs.gt.samples convert|convert_from: gen_sample output_type: v |
name: value |
convert.gs.gt.gen convert.gs.gt.samples value |
| Test-2 |
convert|input_file: convert.hs.gt.hap convert|input_sample: convert.hs.gt.samples convert|convert_from: hap_sample output_type: v |
name: value |
convert.hs.gt.hap convert.hs.gt.samples value |
| Test-3 |
convert|input_file: convert.hls.gt.hap convert|input_legend: convert.hls.gt.legend convert|input_sample: convert.hls.gt.samples convert|convert_from: hap_legend_sample output_type: v |
name: value |
convert.hls.gt.hap convert.hls.gt.legend convert.hls.gt.samples value |
| Test-4 |
convert|input_file: convert.gvcf.vcf convert|reference_source|fasta_ref: gvcf.fa convert|reference_source|reference_source_selector: history convert|convert_from: gvcf output_type: v |
name: value |
convert.gvcf.vcf gvcf.fa value |
| Test-5 |
convert|input_file: convert.gvcf.vcf convert|reference_source|fasta_ref: gvcf convert|reference_source|reference_source_selector: cached convert|convert_from: gvcf output_type: v |
name: value |
convert.gvcf.vcf value |
| Test-6 |
convert|input_file: convert.23andme convert|reference_source|fasta_ref: 23andme.fa convert|reference_source|reference_source_selector: history convert|samples: SAMPLE1 convert|columns: ID,CHROM,POS,AA convert|convert_from: tsv output_type: v |
name: value |
convert.23andme 23andme.fa value |
| Test-7 |
convert|input_file: convert.23andme convert|reference_source|fasta_ref: 23andme convert|reference_source|reference_source_selector: cached convert|samples: SAMPLE1 convert|columns: ID,CHROM,POS,AA convert|convert_from: tsv output_type: v |
name: value |
convert.23andme value |