| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve/xmfa2gff3/2015_02_13.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve/xmfa2gff3/2.4.0.0 |
| xmfa2gff3 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 2.7 | package |
| biopython | 1.72 | package |
| bcbiogff | 0.6.4 | package |
| Additional information about this tool |
python '${__tool_directory__}/xmfa2gff3.py'
$xmfa
--window_size $window_size
--relative_to $relative_to
--sequences
#for file in $sequences:
'${file}'
#end for
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
xmfa: 2.xmfa sequences: ['karma.fa', 'phagey.fa'] window_size: 10 relative_to: 1 |
name: value |
2.xmfa karma.fa phagey.fa value |