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Repository revision

Revision: 3:af1211ed6c8e

Repository 'vegan_rarefaction'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction

Vegan Rarefaction tool metadata

Miscellaneous

Name: Vegan Rarefaction

Description: curve and statistics

Id: vegan_rarefaction

Guid: toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/2.4-3

Version: 2.4-3

Version command string: Rscript -e 'library(vegan)' 2>&1 > /dev/null | grep 'This is vegan'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/2.4-3 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/0.0.3

toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/0.0.2

vegan_rarefaction

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-vegan

2.4-3

package

Additional information about this tool

Command:

#if "output_r_script" in str( $include_outputs ).split( "," ):
            cp "${vegan_rarefaction_script}" "${output_r_script}" &&
        #end if
        Rscript "${vegan_rarefaction_script}"

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

input_abundance: vegan_in.tabular
species_column: 6
sample_columns: 2
sample_size:
step_size: 1
xlab: Sample Size
ylab: Species
label: True

name: value
name: value
name: value
name: value
name: value
name: value
name: value

vegan_in.tabular
value