| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.0.2.1 |
| raceid_inspecttrajectory |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-raceid | 0.2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputrds: out_traject_default.ltree.rdat |
name: value |
out_traject_default.ltree.rdat value |
| Test-2 |
inputrds: out_traject_default.ltree.rdat trjsid|basic|i: 3 trjsid|basic|br: 1,3,8 trjsid|basic|doit: yes |
name: value name: value |
out_traject_default.ltree.rdat value |
| Test-3 |
inputrds: out_traject_default.ltree.rdat trjfid|basic|cellsfromz: 2,1,4 trjfid|basic|use|filterset_minexpr: 2 trjfid|basic|use|getsom_nb: 1000 trjfid|basic|use|getsom_alpha: 0.5 trjfid|basic|use|plotheat_xlab: True trjfid|basic|use|def: no trjfid|basic|doit: yes |
name: value |
out_traject_default.ltree.rdat value |
| Test-4 |
inputrds: out_traject_default.ltree.rdat trjfid|basic|cellsfromz: 2,1,4 trjfid|basic|som|use|def: no trjfid|basic|som|doit: yes trjfid|basic|doit: yes |
name: value |
out_traject_default.ltree.rdat value |
| Test-5 |
inputrds: out_traject_default.ltree.rdat trjsid|basic|i: 5 trjsid|basic|br: 6,5,3 trjsid|basic|use|zscore: True trjsid|basic|use|ndiffgenes: 14 trjsid|basic|use|def: no trjsid|basic|doit: yes trjfid|basic|cellsfromz: 3,9,2 trjfid|basic|use|filterset_minexpr: 1 trjfid|basic|use|filterset_minnumber: 2 trjfid|basic|use|procsom_corthr: 0.5 trjfid|basic|use|procsom_minsom: 5 trjfid|basic|use|plotheat_ygrid: True trjfid|basic|use|def: no trjfid|basic|som|use_genes|use_genes: Clca4,Mki67,Defa24,Ybx1,Vasp,Apoa1 trjfid|basic|som|use_genes|typer: genelist trjfid|basic|som|doit: yes trjfid|basic|doit: yes |
name: value name: value |
out_traject_default.ltree.rdat value |