Repository revision
10:c2ac6f10b456

Repository 'protein_rna_correlation'
hg clone https://toolshed.g2.bx.psu.edu/repos/pravs/protein_rna_correlation

protein_rna_correlation tool metadata
Miscellaneous
Correlation between protein and transcript expression
protein_rna_correlation
toolshed.g2.bx.psu.edu/repos/pravs/protein_rna_correlation/protein_rna_correlation/0.0.2
0.0.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/pravs/protein_rna_correlation/protein_rna_correlation/0.0.2 (this tool)
protein_rna_correlation
Requirements (dependencies defined in the <requirements> tag set)
name version type
R 3.2.1 package
r-protrnacorr 0.0.1 package
ghostscript 9.10 package
Functional tests
name inputs outputs required files
Test-1 pe_idcol: 7
ge_expcol: 10
pe_idtype: Ensembl_with_version
pe_exp: PE_mouse_singlesample.txt
pe_expcol: 13
ge_exp: GE_mouse_singlesample.txt
doScale: True
ge_idtype: Ensembl_with_version
organism_map: mmusculus_gene_ensembl__GRCm38.p6.map
ge_idcol: 1
writeMapUnmap: True
attributes: name
PE_mouse_singlesample.txt
GE_mouse_singlesample.txt
mmusculus_gene_ensembl__GRCm38.p6.map
name