| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/1.4+galaxy5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/1.4+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/1.4+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/1.4.0-2 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/1.4.0-1 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/0.11.3-2 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/0.11.3-1 |
| toolshed.g2.bx.psu.edu/repos/imgteam/segmetrics/ip_segmetrics/0.11.3 |
| ip_segmetrics |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| segmetrics | 1.4 | package |
| pandas | 0.23.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_seg: input1.png input_gt: input2.png is_seg_unique: True is_gt_unique: True measures_0|measure_type|measure_type_selector: Dice measures_1|measure_type|measure_type_selector: ISBIScore measures_2|measure_type|measure_type_selector: JaccardCoefficient measures_3|measure_type|measure_type_selector: JaccardIndex measures_4|measure_type|measure_type_selector: RandIndex measures_5|measure_type|measure_type_selector: AdjustedRandIndex measures_6|measure_type|measure_type_selector: Hausdorff measures_7|measure_type|quantile: 0.9 measures_7|measure_type|measure_type_selector: Hausdorff measures_8|measure_type|object_based: True measures_8|measure_type|measure_type_selector: Hausdorff measures_9|measure_type|measure_type_selector: NSD measures_10|measure_type|object_based: True measures_10|measure_type|measure_type_selector: NSD measures_11|measure_type|measure_type_selector: FalseSplit measures_12|measure_type|measure_type_selector: FalseMerge measures_13|measure_type|measure_type_selector: FalsePositive measures_14|measure_type|measure_type_selector: FalseNegative |
name: value |
input1.png input2.png value |
| Test-2 |
input_seg: input1.zip input_gt: input2.zip unzip: True is_seg_unique: True is_gt_unique: True measures_0|measure_type|measure_type_selector: Dice measures_1|measure_type|measure_type_selector: ISBIScore measures_2|measure_type|measure_type_selector: JaccardCoefficient measures_3|measure_type|measure_type_selector: JaccardIndex measures_4|measure_type|measure_type_selector: RandIndex measures_5|measure_type|measure_type_selector: AdjustedRandIndex measures_6|measure_type|measure_type_selector: Hausdorff measures_7|measure_type|quantile: 0.9 measures_7|measure_type|measure_type_selector: Hausdorff measures_8|measure_type|object_based: True measures_8|measure_type|measure_type_selector: Hausdorff measures_9|measure_type|measure_type_selector: NSD measures_10|measure_type|object_based: True measures_10|measure_type|measure_type_selector: NSD measures_11|measure_type|measure_type_selector: FalseSplit measures_12|measure_type|measure_type_selector: FalseMerge measures_13|measure_type|measure_type_selector: FalsePositive measures_14|measure_type|measure_type_selector: FalseNegative |
name: value |
input1.zip input2.zip value |