| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/1.1.9.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/0.1.0 |
| circexplorer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circexplorer | 1.1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_selection|input_type: tophat input_selection|fusion: circ_tophat.bam ref: circ_ref.txt genome: circ_genome.fasta |
output: circ_output.txt |
circ_tophat.bam circ_genome.fasta circ_ref.txt circ_output.txt |
| Test-2 |
input_selection|input_type: star ref: circ_ref.txt genome: circ_genome.fasta input_selection|junc: circ_Chimeric.out.junction |
output: circ_output.txt |
circ_Chimeric.out.junction circ_genome.fasta circ_ref.txt circ_output.txt |