| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.7.6.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.7.6.0 |
| sailfish |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bzip2 | 1.0.6 | package |
| sailfish | 0.10.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
biasCorrect: False single_or_paired|single_or_paired_opts: paired single_or_paired|input_mate1: reads_1.fastq single_or_paired|input_mate2: reads_2.fastq refTranscriptSource|TranscriptSource: history refTranscriptSource|ownFile: transcripts.fasta |
output_quant: sailfish_quant_result1.tab |
transcripts.fasta reads_1.fastq reads_2.fastq sailfish_quant_result1.tab |
| Test-2 |
biasCorrect: False single_or_paired|single_or_paired_opts: paired single_or_paired|input_mate1: reads_1.fastq.gz single_or_paired|input_mate2: reads_2.fastq.gz refTranscriptSource|TranscriptSource: history refTranscriptSource|ownFile: transcripts.fasta |
output_quant: sailfish_quant_result1.tab |
transcripts.fasta reads_1.fastq.gz reads_2.fastq.gz sailfish_quant_result1.tab |
| Test-3 |
biasCorrect: True single_or_paired|single_or_paired_opts: paired single_or_paired|input_mate1: reads_1.fastq single_or_paired|input_mate2: reads_2.fastq refTranscriptSource|TranscriptSource: history refTranscriptSource|ownFile: transcripts.fasta |
output_quant: sailfish_bias_result1.tab |
transcripts.fasta reads_1.fastq reads_2.fastq sailfish_bias_result1.tab |
| Test-4 |
biasCorrect: True single_or_paired|single_or_paired_opts: paired geneMap: gene_map.tab single_or_paired|input_mate1: reads_1.fastq single_or_paired|input_mate2: reads_2.fastq refTranscriptSource|TranscriptSource: history refTranscriptSource|ownFile: transcripts.fasta |
output_quant: sailfish_bias_result1.tab output_gene_quant: sailfish_genMap_result1.tab |
transcripts.fasta reads_1.fastq reads_2.fastq gene_map.tab sailfish_bias_result1.tab sailfish_genMap_result1.tab |