| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mudata_import_export/mudata_import_export/0.1.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/mudata_import_export/mudata_import_export/0.1.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mudata_import_export/mudata_import_export/0.1.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/mudata_import_export/mudata_import_export/0.1.6+galaxy0 (this tool) |
| mudata_import_export |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| muon | 0.1.6 | package |
| leidenalg | 0.10.2 | package |
| louvain | 0.8.2 | package |
| mofapy2 | 0.7.2 | package |
| Additional information about this tool |
cat '$script_file' > '$hidden_output' &&
python '$script_file' >> '$hidden_output' &&
touch 'mudata_info.txt' &&
cat 'mudata_info.txt' | sed -r '1 s|MuData object with (.+) = (.*)\s*|\1: \2|g' | sed "s|'||g" | sed -r 's|^\s*(.*):\s(.*)|[\1]\n- \2|g' | sed 's|, |\n- |g'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
operation|modalities_0|name: RNA operation|modalities_0|anndata: rna.h5ad operation|modalities_1|name: ATAC operation|modalities_1|anndata: atac.h5ad operation|make_unique: True operation|mode: import advanced_common|show_log: True |
name: value name: value |
rna.h5ad atac.h5ad value |
| Test-2 |
operation|mudata_in: rna_atac.h5mu operation|mode: export advanced_common|show_log: True |
name: value |
rna_atac.h5mu value |