Repository revision
11:1d9799f4b854

Repository 'hicexplorer_hicmergeloops'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops

hicMergeLoops tool metadata
Miscellaneous
hicMergeLoops
merge detected loops of different resolutions.
hicexplorer_hicmergeloops
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.7.6+galaxy1
3.7.6+galaxy1
hicMergeLoops --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.7.6+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.7.5+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.7.5+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.3.1.0
hicexplorer_hicmergeloops
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.6 package
Additional information about this tool
#for $counter, $loopfile in enumerate($inputFiles):
            ln -s '$loopfile' '${counter}_loop_file.bedgraph' &&
        #end for
        #set $m = ' '.join([ '\'%s_loop_file.bedgraph\'' % $counter for $counter, $inputfile in enumerate($inputFiles) ])

        hicMergeLoops
            --inputFiles $m
            --lowestResolution $lowestResolution
            --outFileName merged_loops.bedgraph
None
False
Functional tests
name inputs outputs required files
Test-1 inputFiles: ['hicMergeLoops/gm12878_10kb.bedgraph', 'hicMergeLoops/gm12878_5kb.bedgraph', 'hicMergeLoops/gm12878_25kb.bedgraph']
lowestResolution: 25000
 name: value
 hicMergeLoops/gm12878_10kb.bedgraph
hicMergeLoops/gm12878_5kb.bedgraph
hicMergeLoops/gm12878_25kb.bedgraph
value