| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.6+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergeloops/hicexplorer_hicmergeloops/3.3.1.0 |
| hicexplorer_hicmergeloops |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.6 | package |
| Additional information about this tool |
#for $counter, $loopfile in enumerate($inputFiles):
ln -s '$loopfile' '${counter}_loop_file.bedgraph' &&
#end for
#set $m = ' '.join([ '\'%s_loop_file.bedgraph\'' % $counter for $counter, $inputfile in enumerate($inputFiles) ])
hicMergeLoops
--inputFiles $m
--lowestResolution $lowestResolution
--outFileName merged_loops.bedgraph
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputFiles: ['hicMergeLoops/gm12878_10kb.bedgraph', 'hicMergeLoops/gm12878_5kb.bedgraph', 'hicMergeLoops/gm12878_25kb.bedgraph'] lowestResolution: 25000 |
name: value |
hicMergeLoops/gm12878_10kb.bedgraph hicMergeLoops/gm12878_5kb.bedgraph hicMergeLoops/gm12878_25kb.bedgraph value |