Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_parse_list/mothur_parse_list/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_parse_list/mothur_parse_list/1.36.1.0 |
mothur_parse_list |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && ln -s '$group' group.dat && ln -s '$count' count.dat && echo 'parse.list( list=otu.dat, #if $label: label=${ str($label).replace(",","-") }, #end if #if $count: count=count.dat, #end if group=group.dat )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.list group: amazon.groups savelog: True |
name: value |
amazon.an.list amazon.groups value |
Test-2 |
otu: amazon.an.list group: amazon.groups label: ['0.03', '0.05'] savelog: True |
name: value |
amazon.an.list amazon.groups value |