| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/3.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.1.0 |
| ProteinQuantifier |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: ProteinQuantifier_input.featureXML top: 3 average: median include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'peptide_out_FLAG'] |
name: value name: value name: value |
ProteinQuantifier_input.featureXML value |
| Test-2 |
in: ProteinQuantifier_input.featureXML top: 2 average: sum include_all: True best_charge_and_fraction: True greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'peptide_out_FLAG'] |
name: value name: value name: value |
ProteinQuantifier_input.featureXML value |
| Test-3 |
in: ProteinQuantifier_3_input.featureXML top: 2 average: mean include_all: True best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'peptide_out_FLAG'] |
name: value name: value name: value |
ProteinQuantifier_3_input.featureXML value |
| Test-4 |
in: ProteinQuantifier_input.consensusXML top: 0 average: sum include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-5 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-6 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: True best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-7 |
in: ProteinQuantifier_input.consensusXML top: 0 average: sum include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: True format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-8 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: True format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-9 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: True best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: True format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'mztab_FLAG'] |
name: value name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-10 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: True best_charge_and_fraction: False greedy_group_resolution: False ratios: True ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: True format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-11 |
in: ProteinQuantifier_input.consensusXML top: 3 average: sum include_all: True best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: True consensus|normalize: False consensus|fix_peptides: True format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
ProteinQuantifier_input.consensusXML value |
| Test-12 |
in: ProteinQuantifier_input.idXML top: 0 average: sum include_all: False best_charge_and_fraction: False greedy_group_resolution: False ratios: False ratiosSILAC: False consensus|normalize: False consensus|fix_peptides: False format|separator: format|quoting: double format|replacement: _ adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG', 'peptide_out_FLAG'] |
name: value name: value name: value |
ProteinQuantifier_input.idXML value |