| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/filter_spades_repeats/filter_spades_repeat/1.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/filter_spades_repeats/filter_spades_repeat/1.0.0 |
| filter_spades_repeat |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| perl-bioperl | 1.6.924 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta_input: SPAdes_scaffolds_(fasta).fasta tab_input: SPAdes_scaffold_stats.tabular |
output_with_repeats: Filtered_sequences_(with_repeats).fasta output_without_repeats: Filtered_sequences_(no_repeats).fasta repeat_sequences_only: Repeat_sequences.fasta discarded_sequences: Discarded_sequences.fasta summary: Results_summary.txt |
SPAdes_scaffolds_(fasta).fasta SPAdes_scaffold_stats.tabular Filtered_sequences_(with_repeats).fasta Filtered_sequences_(no_repeats).fasta Repeat_sequences.fasta Discarded_sequences.fasta Results_summary.txt |