| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_pseudo/kallisto_pseudo/0.43.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_pseudo/kallisto_pseudo/0.43.1.0 (this tool) |
| kallisto_pseudo |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| kallisto | 0.43.1 | package |
| samtools | 1.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
single_paired|collection|fastq_umi|reverse: mm10_chrM-1.r.fq single_paired|collection|fastq_umi|umi: yes reference_genome|reference_genome_source: history single_paired|collection|fastq_umi|forward: mm10_chrM.umi single_paired|collection|collection_selector: datasets reference_genome|reference: mm10_chrM.fa single_paired|single_paired_selector: paired |
sample: None |
mm10_chrM.fa mm10_chrM.umi mm10_chrM-1.r.fq |
| Test-2 |
single_paired|single_paired_selector: paired single_paired|collection|reads: paired collection reference_genome|reference: mm10_chrM.fa reference_genome|reference_genome_source: history single_paired|collection|collection_selector: collection |
sample: None |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq |
| Test-3 |
single_paired|single_paired_selector: single single_paired|reads: mm10_chrM-1.f.fq reference_genome|reference: mm10_chrM.fa reference_genome|reference_genome_source: history |
sample: None |
mm10_chrM.fa mm10_chrM-1.f.fq |
| Test-4 |
single_paired|collection|fastq_umi|reverse: felCat8_chrM_R.fq single_paired|collection|fastq_umi|umi: no reference_genome|reference_genome_source: history single_paired|collection|fastq_umi|forward: felCat8_chrM_F.fq single_paired|collection|collection_selector: datasets reference_genome|reference: felCat8_chrM.fa single_paired|single_paired_selector: paired |
sample: None |
felCat8_chrM.fa felCat8_chrM_F.fq felCat8_chrM_R.fq |
| Test-5 |
single_paired|collection|fastq_umi|forward: sacCer2_chrM_F.fq.gz single_paired|collection|fastq_umi|reverse: sacCer2_chrM_R.fq.gz pseudobam: True single_paired|collection|collection_selector: datasets single_paired|single_paired_selector: paired |
sample: None pseudobam_output: kallisto_pseudo_out5.bam |
sacCer2_chrM_F.fq.gz sacCer2_chrM_R.fq.gz kallisto_pseudo_out5.bam |
| Test-6 |
single_paired|collection|fastq_umi|forward: sacCer2_chrM.umi single_paired|collection|fastq_umi|reverse: sacCer2_chrM_R.fq.gz single_paired|collection|fastq_umi|umi: yes single_paired|single_paired_selector: paired single_paired|collection|collection_selector: datasets |
sample: None |
sacCer2_chrM.umi sacCer2_chrM_R.fq.gz |