Repository revision
1:91abc3b2e948

Repository 'hicexplorer_chicviewpointbackgroundmodel'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpointbackgroundmodel

chicViewpointBackgroundModel tool metadata
Miscellaneous
compute a background model for cHi-C / HiChIP data
hicexplorer_chicviewpointbackgroundmodel
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpointbackgroundmodel/hicexplorer_chicviewpointbackgroundmodel/3.4.1.0
3.4.1.0
chicViewpointBackgroundModel --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpointbackgroundmodel/hicexplorer_chicviewpointbackgroundmodel/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpointbackgroundmodel/hicexplorer_chicviewpointbackgroundmodel/3.4.1.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpointbackgroundmodel/hicexplorer_chicviewpointbackgroundmodel/3.3.1.0
hicexplorer_chicviewpointbackgroundmodel
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.4.1 package
Functional tests
name inputs outputs required files
Test-1 referencePoints: cHi-C/referencePoints.bed
matrix_h5_cooler_multiple: ['cHi-C/FL-E13-5_chr1.cool', 'cHi-C/MB-E10-5_chr1.cool']
attributes: name
cHi-C/FL-E13-5_chr1.cool
cHi-C/MB-E10-5_chr1.cool
cHi-C/referencePoints.bed
name