Repository revision
9:733bfc5872b1

Repository 'mothur_merge_taxsummary'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_taxsummary

Merge.taxsummary tool metadata
Miscellaneous
Merge tax.summary files
mothur_merge_taxsummary
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_taxsummary/mothur_merge_taxsummary/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_taxsummary/mothur_merge_taxsummary/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_taxsummary/mothur_merge_taxsummary/1.36.1.0
mothur_merge_taxsummary
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Additional information about this tool
set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
#for $i in $input:
    ln -s '$i' input${input.index($i)}.dat &&
#end for

echo 'merge.taxsummary(
    input=#for $i in $input#input${input.index($i)}.dat-#end for#,
    output=$output
)'
| sed 's/ //g'  ## mothur trips over whitespace
| sed 's/-,/,/g'
| mothur
| tee mothur.out.log
    
None
False
Functional tests
name inputs outputs required files
Test-1 input: ['amazon.wang.knn.tax.summary', 'amazon.silva.wang.tax.summary']
savelog: True
name: value
name: value
amazon.wang.knn.tax.summary
amazon.silva.wang.tax.summary
value